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Ta11-like non-LTR retrotransposon [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815836, updated on 18-Sep-2024

Summary

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Official Full Name
Ta11-like non-LTR retrotransposon
Primary source
TAIR:AT2G13500
Locus tag
AT2G13500
See related
Araport:AT2G13500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T10F5.4; T10F5_4
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (5627936..5629099)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene Ta11-like non-LTR retrotransposon Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_126932.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ta11-like non-LTR retrotransposon
NP_178976.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41590.1); Has 126 Blast hits to 126 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    5627936..5629099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126932.1 → NP_178976.1  Ta11-like non-LTR retrotransposon [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178976.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VNI0, Q9SIU4
    Conserved Domains (2) summary
    pfam14111
    Location:30 → 170
    DUF4283; Domain of unknown function (DUF4283)
    pfam14392
    Location:172 → 218
    zf-CCHC_4; Zinc knuckle
Nucleotide Protein
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