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F-box/LRR protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815159, updated on 18-Sep-2024

Summary

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Official Full Name
F-box/LRR protein
Primary source
TAIR:AT2G06040
Locus tag
AT2G06040
See related
Araport:AT2G06040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5K7.20; F5K7_20
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (2352145..2355597, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene OBP3-responsive protein 4 (ORG4) Neighboring gene Homeodomain-like superfamily protein Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene pseudo Neighboring gene oxophytodienoate-reductase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RAD7 homologues contribute to Arabidopsis UV tolerance. Lahari T, et al. Plant Sci, 2018 Dec. PMID 30466592
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_126618.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within nucleotide-excision repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to UV-C IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box/LRR protein
NP_178661.2
  • CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    2352145..2355597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126618.5 → NP_178661.2  F-box/LRR protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178661.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IIC2, Q0WNX6, Q682R0
    Conserved Domains (2) summary
    cd09293
    Location:446 → 632
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:538 → 563
    LRR_AMN1; leucine-rich repeat [structural motif]
Nucleotide Protein
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