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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815153, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT2G06000
Locus tag
AT2G06000
See related
Araport:AT2G06000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6P5.20; T6P5_20
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (2327253..2329873, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene FRIGIDA interacting protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_126613.4
NM_201700.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_178657.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 50374 Blast hits to 14280 proteins in 277 species: Archae - 4; Bacteria - 40; Metazoa - 520; Fungi - 618; Plants - 47817; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink).
NP_973429.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    2327253..2329873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_201700.3 → NP_973429.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973429.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZUE9
    UniProtKB/TrEMBL
    A0A178VRL2, A0A654F323, B9DFG1
    Conserved Domains (5) summary
    TIGR00756
    Location:418 → 451
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:279 → 306
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:105 → 134
    PPR; PPR repeat
    pfam12854
    Location:273 → 303
    PPR_1; PPR repeat
    pfam13041
    Location:345 → 394
    PPR_2; PPR repeat family

  2. NM_126613.4 → NP_178657.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178657.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZUE9
    UniProtKB/TrEMBL
    A0A178VRL2, A0A654F323, B9DFG1
    Conserved Domains (5) summary
    TIGR00756
    Location:418 → 451
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:279 → 306
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:105 → 134
    PPR; PPR repeat
    pfam12854
    Location:273 → 303
    PPR_1; PPR repeat
    pfam13041
    Location:345 → 394
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZUE9.1

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