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CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815064, updated on 18-Sep-2024

Summary

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Official Full Name
CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
Primary source
TAIR:AT2G05160
Locus tag
AT2G05160
See related
Araport:AT2G05160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5G3.6; F5G3_6
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (1858543..1862064, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein Neighboring gene miscRNA Neighboring gene vacuolar protein sorting 11 Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Highly Overexpressed AtC3H18 Impairs Microgametogenesis via Promoting the Continuous Assembly of mRNP Granules. Xu L, et al. Front Plant Sci, 2022. PMID 35909782, Free PMC Article
  2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001335272.1
NM_001335273.1
NM_126543.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
NP_178588.1
  • CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G52980.1); Has 286 Blast hits to 218 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    1858543..1862064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126543.7 → NP_178588.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178588.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SJ41
    UniProtKB/TrEMBL
    A0A5S9WXA6, A0A654F2W0
    Conserved Domains (2) summary
    smart00356
    Location:159 → 181
    ZnF_C3H1; zinc finger
    cd12458
    Location:319 → 388
    RRM_AtC3H46_like; RNA recognition motif in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

  2. NM_001335272.1 → NP_001324109.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SJ41
    UniProtKB/TrEMBL
    A0A5S9WXA6, A0A654F2W0

  3. NM_001335273.1 → NP_001324108.1  CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AZ14, A0A5S9WXA6, A0A654F2W0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SJ41.1

Gene LinkOut

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