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SCL21 SCARECROW-like 21 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815036, updated on 18-Sep-2024

Summary

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Official Symbol
SCL21
Official Full Name
SCARECROW-like 21
Primary source
TAIR:AT2G04890
Locus tag
AT2G04890
See related
Araport:AT2G04890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1O13.2; F1O13_2; SCARECROW-like 21
Summary
Encodes a scarecrow-like protein (SCL21). Member of GRAS gene family.
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Genomic context

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See SCL21 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (1720361..1722604, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Aminotransferase-like, plant mobile domain family protein Neighboring gene uncharacterized protein Neighboring gene zinc-dependent activator protein-1 Neighboring gene uncharacterized protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene F-box and associated interaction domains-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two GRAS proteins, SCARECROW-LIKE21 and PHYTOCHROME A SIGNAL TRANSDUCTION1, function cooperatively in phytochrome A signal transduction. Torres-Galea P, et al. Plant Physiol, 2013 Jan. PMID 23109688, Free PMC Article
  2. A root-knot nematode secretory peptide functions as a ligand for a plant transcription factor. Huang G, et al. Mol Plant Microbe Interact, 2006 May. PMID 16673933
  3. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Popescu SC, et al. Proc Natl Acad Sci U S A, 2007 Mar 13. PMID 17360592, Free PMC Article
  4. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Both PAT1 and SCL21 are involved in phyA-dependent signaling.
    Title: Two GRAS proteins, SCARECROW-LIKE21 and PHYTOCHROME A SIGNAL TRANSDUCTION1, function cooperatively in phytochrome A signal transduction.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_126521.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SCARECROW-like 21
NP_178566.1
  • SCARECROW-like 21 (SCL21); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G48150.2); Has 2478 Blast hits to 2441 proteins in 302 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2474; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    1720361..1722604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126521.3 → NP_178566.1  SCARECROW-like 21 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178566.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q67ZL8, Q67ZX7, Q9S7H5
    UniProtKB/TrEMBL
    A0A178VWV4, A0A5S9WX85, A0A654ETB9
    Conserved Domains (1) summary
    pfam03514
    Location:50 → 413
    GRAS; GRAS domain family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S7H5.1

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