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late embryogenesis abundant domain-containing protein / LEA domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814901, updated on 18-Sep-2024

Summary

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Official Full Name
late embryogenesis abundant domain-containing protein / LEA domain-containing protein
Primary source
TAIR:AT2G03740
Locus tag
AT2G03740
See related
Araport:AT2G03740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F19B11.19; F19B11_19
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (1142725..1143988, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ACT domain repeat 5 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene sulfotransferase 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Folding of intrinsically disordered plant LEA proteins is driven by glycerol-induced crowding and the presence of membranes. Bremer A, et al. FEBS J, 2017 Mar. PMID 28109185
  2. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_126421.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cold acclimation IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
late embryogenesis abundant domain-containing protein / LEA domain-containing protein
NP_178469.1
  • late embryogenesis abundant domain-containing protein / LEA domain-containing protein; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT2G03850.1); Has 1140 Blast hits to 576 proteins in 184 species: Archae - 2; Bacteria - 341; Metazoa - 46; Fungi - 35; Plants - 656; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    1142725..1143988 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126421.2 → NP_178469.1  late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178469.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VW41, Q9ZPQ7
    Conserved Domains (1) summary
    cl02879
    Location:1 → 66
    Chloroa_b-bind; Chlorophyll A-B binding protein
Nucleotide Protein
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