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Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814872, updated on 18-Sep-2024

Summary

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Official Full Name
Ankyrin repeat family protein
Primary source
TAIR:AT2G03430
Locus tag
AT2G03430
See related
Araport:AT2G03430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T4M8.14; T4M8_14
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (1036008..1037675, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uvrB/uvrC motif-containing protein Neighboring gene uncharacterized protein Neighboring gene Mo25 family protein Neighboring gene nodulin-related protein 1 Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_126394.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in plant-type cell wall HDA PubMed 

General protein information

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Preferred Names
Ankyrin repeat family protein
NP_178442.2
  • Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    1036008..1037675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126394.5 → NP_178442.2  Ankyrin repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178442.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VQH0, Q8GZ22
    Conserved Domains (3) summary
    COG0666
    Location:13 → 210
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:82 → 113
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:87 → 179
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
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