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DUF538 family protein (Protein of unknown function, DUF538) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814864, updated on 18-Sep-2024

Summary

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Official Full Name
DUF538 family protein (Protein of unknown function, DUF538)
Primary source
TAIR:AT2G03350
Locus tag
AT2G03350
See related
Araport:AT2G03350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T4M8.22; T4M8_22
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (1019535..1021186, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene WRKY DNA-binding protein 3 Neighboring gene Glycosyltransferase family 61 protein Neighboring gene O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_126386.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
DUF538 family protein (Protein of unknown function, DUF538)
NP_565300.1
  • Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT3G08890.2); Has 544 Blast hits to 544 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 543; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    1019535..1021186 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126386.3 → NP_565300.1  DUF538 family protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565300.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVT8, A0A5S9WWV1, Q9ZQ71
    Conserved Domains (1) summary
    pfam04398
    Location:60 → 166
    DUF538; Protein of unknown function, DUF538
Nucleotide Protein
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