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emb1579 ATP/GTP-binding protein family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814844, updated on 18-Sep-2024

Summary

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Official Symbol
emb1579
Official Full Name
ATP/GTP-binding protein family
Primary source
TAIR:AT2G03150
Locus tag
AT2G03150
See related
Araport:AT2G03150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo defective 1579; RSA1; SHORT ROOT IN SALT MEDIUM 1; T18E12.18; T18E12_18
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Genomic context

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See emb1579 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
19
Sequence:
Chromosome: 2; NC_003071.7 (951888..959236)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene SKP1-like 19 Neighboring gene SKP1-like 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phase separation of Arabidopsis EMB1579 controls transcription, mRNA splicing, and development. Zhang Y, et al. PLoS Biol, 2020 Jul. PMID 32692742, Free PMC Article
  2. A nuclear calcium-sensing pathway is critical for gene regulation and salt stress tolerance in Arabidopsis. Guan Q, et al. PLoS Genet, 2013 Aug. PMID 24009530, Free PMC Article
  3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Phase separation of Arabidopsis EMB1579 controls transcription, mRNA splicing, and development.
    Title: Phase separation of Arabidopsis EMB1579 controls transcription, mRNA splicing, and development.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001335170.1
NM_126366.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to salt stress IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to salt stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within sodium ion homeostasis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ATP/GTP-binding protein family
NP_178414.2
  • embryo defective 1579 (emb1579); FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    951888..959236
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126366.5 → NP_178414.2  ATP/GTP-binding protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178414.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IS91, O81059, Q0WQ79, Q8W4H5
    UniProtKB/TrEMBL
    A0A178W0U1
    Conserved Domains (3) summary
    pfam14443
    Location:599 → 712
    DBC1; DBC1
    cl25352
    Location:1267 → 1338
    EFh_PEF; The penta-EF hand (PEF) family
    cl26511
    Location:771 → 1274
    Neuromodulin_N; Gap junction protein N-terminal region

  2. NM_001335170.1 → NP_001323719.1  ATP/GTP-binding protein family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W0U1, A0A1P8AXY9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IS91.1

Gene LinkOut

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