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PLPB PAS/LOV protein B [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814800, updated on 18-Sep-2024

Summary

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Official Symbol
PLPB
Official Full Name
PAS/LOV protein B
Primary source
TAIR:AT2G02710
Locus tag
AT2G02710
See related
Araport:AT2G02710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
PAS/LOV PROTEIN; PAS/LOV PROTEIN A; PAS/LOV protein B; PAS/LOV PROTEIN C; PLP; PLPA; PLPC; T20F6.15; T20F6_15
Summary
Encodes a putative blue light receptor protein.
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Genomic context

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See PLPB in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (758693..761064, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Pectate lyase family protein Neighboring gene ncRNA Neighboring gene GRIP/coiled-coil protein, putative (DUF1664) Neighboring gene ssDNA-binding transcriptional regulator Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Blue light diminishes interaction of PAS/LOV proteins, putative blue light receptors in Arabidopsis thaliana, with their interacting partners. Ogura Y, et al. J Plant Res, 2008 Jan. PMID 17982713
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001335131.1
NM_001335132.1
NM_126326.5
NM_179597.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PAS/LOV protein B
NP_001318183.1
  • PAS/LOV PROTEIN C (PLPC); FUNCTIONS IN: two-component sensor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700); BEST Arabidopsis thaliana protein match is: phototropin 2 (TAIR:AT5G58140.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_565288.1
  • PAS/LOV protein B (PLPB); FUNCTIONS IN: two-component sensor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700); BEST Arabidopsis thaliana protein match is: phototropin 2 (TAIR:AT5G58140.4); Has 7028 Blast hits to 3884 proteins in 881 species: Archae - 167; Bacteria - 4096; Metazoa - 907; Fungi - 432; Plants - 1066; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink).
NP_849928.1
  • PAS/LOV PROTEIN A (PLPA); FUNCTIONS IN: two-component sensor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700); BEST Arabidopsis thaliana protein match is: phototropin 2 (TAIR:AT5G58140.4); Has 7907 Blast hits to 4438 proteins in 966 species: Archae - 193; Bacteria - 4889; Metazoa - 921; Fungi - 440; Plants - 1071; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    758693..761064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126326.5 → NP_565288.1  PAS/LOV protein B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565288.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64511, Q3EC83, Q8W419, Q93VM4
    UniProtKB/TrEMBL
    A0A178VU83, A0A5S9WWP1, A0A654F287
    Conserved Domains (2) summary
    PRK13558
    Location:28 → 171
    PRK13558; bacterio-opsin activator; Provisional
    PRK13559
    Location:256 → 379
    PRK13559; hypothetical protein; Provisional

  2. NM_001335131.1 → NP_001318183.1  PAS/LOV protein B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2H1ZE16, A0A654F287

  3. NM_001335132.1 → NP_001324185.1  PAS/LOV protein B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AZE7

  4. NM_179597.1 → NP_849928.1  PAS/LOV protein B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849928.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F287
    Conserved Domains (3) summary
    smart00091
    Location:27 → 73
    PAS; PAS domain
    cd00130
    Location:269 → 358
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam13426
    Location:260 → 360
    PAS_9; PAS domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O64511.2

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