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yacP-like NYN domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814772, updated on 18-Sep-2024

Summary

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Official Full Name
yacP-like NYN domain protein
Primary source
TAIR:AT2G02410
Locus tag
AT2G02410
See related
Araport:AT2G02410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT2G02420; T16F16.20; T16F16_20
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (632634..634994)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase (class zeta) 2 Neighboring gene glutathione S-transferase zeta 1 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene miscRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001202571.2
NM_001335111.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
yacP-like NYN domain protein
NP_001189500.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298).
NP_001189501.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298).
NP_178346.2
  • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298); Has 1151 Blast hits to 1151 proteins in 597 species: Archae - 0; Bacteria - 1105; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    632634..634994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335113.1 → NP_001324005.1  yacP-like NYN domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYS9, A0A7G2E4X8

  2. NM_001335112.1 → NP_001324004.1  yacP-like NYN domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYV9

  3. NM_001335114.1 → NP_001324002.1  yacP-like NYN domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYT1, A0A7G2E6S1

  4. NM_001202572.1 → NP_001189501.1  yacP-like NYN domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189501.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E4X8, F4IQD5
    Conserved Domains (1) summary
    pfam05991
    Location:68 → 234
    NYN_YacP; YacP-like NYN domain

  5. NM_001335115.1 → NP_001324003.1  yacP-like NYN domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYR9

  6. NM_001335116.1 → NP_001324000.1  yacP-like NYN domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYV8, A0A7G2E6S1
    Conserved Domains (1) summary
    cd10912
    Location:132 → 244
    PIN_YacP-like; PIN_domain of Bacillus subtilis YacP/Rae1 and related proteins

  7. NM_001335117.1 → NP_001324001.1  yacP-like NYN domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYQ2, Q9ZVQ1

  8. NM_001335108.1 → NP_001323996.1  yacP-like NYN domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYR9

  9. NM_001335109.1 → NP_001323997.1  yacP-like NYN domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYV8, A0A7G2E6S1
    Conserved Domains (1) summary
    cd10912
    Location:132 → 244
    PIN_YacP-like; PIN_domain of Bacillus subtilis YacP/Rae1 and related proteins

  10. NM_126298.4 → NP_178346.2  yacP-like NYN domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178346.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ERC3, A0A7G2E6S1, Q8GZ36
    Conserved Domains (1) summary
    cd10912
    Location:132 → 273
    PIN_YacP-like; PIN_domain of Bacillus subtilis YacP/Rae1 and related proteins

  11. NM_001335110.1 → NP_001323998.1  yacP-like NYN domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VTM8, A0A1P8AYP8

  12. NM_001202571.2 → NP_001189500.1  yacP-like NYN domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189500.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E4X8, F4IQD4
    Conserved Domains (1) summary
    pfam05991
    Location:85 → 251
    NYN_YacP; YacP-like NYN domain

  13. NM_001335111.1 → NP_001323999.1  yacP-like NYN domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYS9, A0A7G2E4X8
Nucleotide Protein
Heading Accession and Version

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