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LOC8083210 uncharacterized LOC8083210 [ Sorghum bicolor (sorghum) ]

Gene ID: 8083210, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8083210
Gene description
uncharacterized LOC8083210
Locus tag
SORBI_3010G229600
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8083210 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 10 NC_012879.2 (57230098..57231289, complement)

Chromosome 10 - NC_012879.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8083209 Neighboring gene solanesyl-diphosphate synthase 1, mitochondrial Neighboring gene BEACH domain-containing protein B Neighboring gene L-ascorbate oxidase homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012879.2 Chromosome 10 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC8083210

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012879.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    57230098..57231289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002438808.2 → XP_002438853.1  uncharacterized protein LOC8083210

    See identical proteins and their annotated locations for XP_002438853.1

    UniProtKB/TrEMBL
    A0A921Q4Z0, C5Z7U8
    Conserved Domains (1) summary
    pfam09446
    Location:3 → 66
    VMA21; VMA21-like domain
Nucleotide Protein
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