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LOC8083005 U3 small nucleolar ribonucleoprotein protein MPP10 [ Sorghum bicolor (sorghum) ]

Gene ID: 8083005, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8083005
Gene description
U3 small nucleolar ribonucleoprotein protein MPP10
Locus tag
SORBI_3009G204400
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8083005 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 9 NC_012878.2 (55299369..55305169)

Chromosome 9 - NC_012878.2Genomic Context describing neighboring genes Neighboring gene putative dual specificity protein phosphatase DSP8 Neighboring gene senescence-induced receptor-like serine/threonine-protein kinase Neighboring gene mitochondrial-processing peptidase subunit alpha Neighboring gene ATP-dependent 6-phosphofructokinase 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012878.2 Chromosome 9 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Mpp10 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sno(s)RNA-containing ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar ribonucleoprotein protein MPP10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012878.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    55299369..55305169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002440063.2 → XP_002440108.1  U3 small nucleolar ribonucleoprotein protein MPP10

    See identical proteins and their annotated locations for XP_002440108.1

    UniProtKB/TrEMBL
    A0A1Z5R3M2, A0A921U5I3
    Conserved Domains (1) summary
    cl27202
    Location:252 → 518
    Mpp10; Mpp10 protein
Nucleotide Protein
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