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LOC8079717 WD repeat-containing protein 20 homolog [ Sorghum bicolor (sorghum) ]

Gene ID: 8079717, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8079717
Gene description
WD repeat-containing protein 20 homolog
Locus tag
SORBI_3005G059600
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8079717 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 5 NC_012874.2 (6154528..6163347)

Chromosome 5 - NC_012874.2Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At4g17915 Neighboring gene protein TPLATE Neighboring gene cleavage stimulating factor 64 Neighboring gene NAC domain-containing protein 41

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012874.2 Chromosome 5 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 20 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012874.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    6154528..6163347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002449051.2 → XP_002449096.1  WD repeat-containing protein 20 homolog

    See identical proteins and their annotated locations for XP_002449096.1

    UniProtKB/TrEMBL
    A0A1Z5RGY3, A0A921QW00, C5Y633
    Conserved Domains (2) summary
    sd00039
    Location:237 → 273
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:304 → 514
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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