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LOC8079209 ADP-ribosylation factor-related protein 1 [ Sorghum bicolor (sorghum) ]

Gene ID: 8079209, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8079209
Gene description
ADP-ribosylation factor-related protein 1
Locus tag
SORBI_3002G378300
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8079209 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 2 NC_012871.2 (73477744..73481218, complement)

Chromosome 2 - NC_012871.2Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase 1B, mitochondrial Neighboring gene AP-4 complex subunit mu Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A Neighboring gene cyclin-D2-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012871.2 Chromosome 2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi to plasma membrane protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADP-ribosylation factor-related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012871.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    73477744..73481218 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002463148.2 → XP_002463193.1  ADP-ribosylation factor-related protein 1

    See identical proteins and their annotated locations for XP_002463193.1

    UniProtKB/TrEMBL
    A0A921RTW0, C5X2G4
    Conserved Domains (1) summary
    cl38936
    Location:20 → 183
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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