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LOC8077426 protein phosphatase 1 regulatory subunit SDS22 [ Sorghum bicolor (sorghum) ]

Gene ID: 8077426, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8077426
Gene description
protein phosphatase 1 regulatory subunit SDS22
Locus tag
SORBI_3003G440700
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8077426 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (73964445..73967340, complement)

Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8074122 Neighboring gene ABC transporter D family member 1 Neighboring gene ylmG homolog protein 1-1, chloroplastic Neighboring gene vacuolar protein sorting-associated protein 55 homolog Neighboring gene transfer RNA leucine (anticodon UAG)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein phosphatase 1 regulatory subunit SDS22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    73964445..73967340 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002459120.2 → XP_002459165.1  protein phosphatase 1 regulatory subunit SDS22

    See identical proteins and their annotated locations for XP_002459165.1

    UniProtKB/TrEMBL
    A0A921RJ95, C5XJA7
    Conserved Domains (2) summary
    sd00033
    Location:17 → 38
    LRR_RI; leucine-rich repeat [structural motif]
    cd21340
    Location:18 → 262
    PPP1R42; protein phosphatase 1 regulatory subunit 42
Nucleotide Protein
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