U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC8074510 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [ Sorghum bicolor (sorghum) ]

Gene ID: 8074510, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC8074510
Gene description
pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
Locus tag
SORBI_3003G124600
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC8074510 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (11291308..11298374, complement)

Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene uncharacterized isomerase BH0283 Neighboring gene peroxiredoxin-2F, mitochondrial Neighboring gene uncharacterized LOC8074511 Neighboring gene uncharacterized LOC110433505

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    11291308..11298374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002457576.2 → XP_002457621.1  pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1

    See identical proteins and their annotated locations for XP_002457621.1

    UniProtKB/TrEMBL
    A0A921RB75, C5XGK1
    Conserved Domains (5) summary
    smart00487
    Location:417 → 589
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:804 → 889
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:423 → 561
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:586 → 743
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam07717
    Location:913 → 1023
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials