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LOC8069937 L-aspartate oxidase, chloroplastic [ Sorghum bicolor (sorghum) ]

Gene ID: 8069937, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8069937
Gene description
L-aspartate oxidase, chloroplastic
Locus tag
SORBI_3004G032400
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8069937 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 4 NC_012873.2 (2615935..2620771)

Chromosome 4 - NC_012873.2Genomic Context describing neighboring genes Neighboring gene phosphopantetheine adenylyltransferase Neighboring gene uncharacterized LOC8057525 Neighboring gene CASP-like protein 4A1 Neighboring gene mitogen-activated protein kinase 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012873.2 Chromosome 4 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-aspartate oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NAD biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
L-aspartate oxidase, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012873.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    2615935..2620771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002451448.2 → XP_002451493.1  L-aspartate oxidase, chloroplastic

    See identical proteins and their annotated locations for XP_002451493.1

    UniProtKB/TrEMBL
    A0A921UH31, C5XTX1
    Conserved Domains (3) summary
    PLN02815
    Location:58 → 654
    PLN02815; L-aspartate oxidase
    pfam02910
    Location:537 → 620
    Succ_DH_flav_C; Fumarate reductase flavoprotein C-term
    cl21454
    Location:85 → 489
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
Heading Accession and Version

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