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LOC8064257 zinc finger transcription factor YY1 [ Sorghum bicolor (sorghum) ]

Gene ID: 8064257, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8064257
Gene description
zinc finger transcription factor YY1
Locus tag
SORBI_3004G174400
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8064257 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 4 NC_012873.2 (52696752..52700117)

Chromosome 4 - NC_012873.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8063061 Neighboring gene pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 Neighboring gene uncharacterized LOC110434528 Neighboring gene putative multidrug resistance protein Neighboring gene vegetative cell wall protein gp1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012873.2 Chromosome 4 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PcG protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger transcription factor YY1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012873.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    52696752..52700117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021460508.1 → XP_021316183.1  zinc finger transcription factor YY1 isoform X2

    UniProtKB/TrEMBL
    A0A921R6A1
    Conserved Domains (2) summary
    COG5048
    Location:96 → 266
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:67 → 86
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_002452207.2 → XP_002452252.1  zinc finger transcription factor YY1 isoform X1

    See identical proteins and their annotated locations for XP_002452252.1

    UniProtKB/TrEMBL
    A0A921R617, C5XU70
    Conserved Domains (3) summary
    COG5048
    Location:96 → 271
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:67 → 86
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:108 → 133
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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