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LOC8063919 clathrin interactor EPSIN 1 [ Sorghum bicolor (sorghum) ]

Gene ID: 8063919, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8063919
Gene description
clathrin interactor EPSIN 1
Locus tag
SORBI_3006G202200
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8063919 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 6 NC_012875.2 (55340662..55346446)

Chromosome 6 - NC_012875.2Genomic Context describing neighboring genes Neighboring gene uncharacterized GTP-binding protein YjiA Neighboring gene cell division cycle 20.2, cofactor of APC complex Neighboring gene myb family transcription factor PHL11 Neighboring gene uncharacterized LOC110436340 Neighboring gene ubiquinol oxidase 2, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012875.2 Chromosome 6 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
clathrin interactor EPSIN 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012875.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    55340662..55346446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002446999.2 → XP_002447044.1  clathrin interactor EPSIN 1

    See identical proteins and their annotated locations for XP_002447044.1

    UniProtKB/TrEMBL
    A0A921UE68, C5YF53
    Conserved Domains (1) summary
    pfam01417
    Location:27 → 148
    ENTH; ENTH domain
Nucleotide Protein
Heading Accession and Version

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