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spata17 spermatogenesis associated 17 [ Danio rerio (zebrafish) ]

Gene ID: 799739, updated on 9-Dec-2024

Summary

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Official Symbol
spata17provided by ZNC
Official Full Name
spermatogenesis associated 17provided by ZNC
Primary source
ZFIN:ZDB-GENE-111214-1
See related
Ensembl:ENSDARG00000054414 AllianceGenome:ZFIN:ZDB-GENE-111214-1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable calmodulin binding activity. Predicted to be involved in establishment of meiotic spindle localization; mitotic cell cycle; and spindle organization. Predicted to be located in cytoplasm. Predicted to be active in spindle pole. Orthologous to human SPATA17 (spermatogenesis associated 17). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See spata17 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (30205258..30274318)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (30188295..30257357)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene Usher syndrome 2A (autosomal recessive, mild) Neighboring gene uncharacterized LOC137488110 Neighboring gene estrogen-related receptor gamma a Neighboring gene uncharacterized LOC137488111 Neighboring gene uncharacterized LOC108179773 Neighboring gene uncharacterized LOC137488112 Neighboring gene growth regulating estrogen receptor binding 1 Neighboring gene lipin 1a Neighboring gene profilin family member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Overexpression a novel zebra fish spermatogenesis-associated gene 17 (SPATA17) induces apoptosis in GC-1 cells. Nie D, et al. Mol Biol Rep, 2011 Aug. PMID 21108043
  2. A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement. Kim OTP, et al. BMC Genomics, 2018 Oct 5. PMID 30290758, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The zebra fish SPATA17 gene was expressed strongly in testis and a slight amount of expression in ovary.
    Title: Overexpression a novel zebra fish spermatogenesis-associated gene 17 (SPATA17) induces apoptosis in GC-1 cells.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
spermatogenesis-associated protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142264.1 → NP_001135736.1  spermatogenesis-associated protein 17

    See identical proteins and their annotated locations for NP_001135736.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ358583
    UniProtKB/TrEMBL
    A0A8M1NQK1, B6VAM9
    Related
    ENSDARP00000071067.3, ENSDART00000076596.6
    Conserved Domains (1) summary
    COG5022
    Location:87 → 161
    COG5022; Myosin heavy chain [General function prediction only]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    30205258..30274318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068214470.1 → XP_068070571.1  spermatogenesis-associated protein 17 isoform X2

  2. XM_068214469.1 → XP_068070570.1  spermatogenesis-associated protein 17 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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