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fbxl9 F-box and leucine rich repeat protein [ Danio rerio (zebrafish) ]

Gene ID: 799466, updated on 9-Dec-2024

Summary

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Official Symbol
fbxl9provided by ZNC
Official Full Name
F-box and leucine rich repeat proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7165
See related
Ensembl:ENSDARG00000076425 AllianceGenome:ZFIN:ZDB-GENE-030131-7165
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
lrrc29; fk91e06; wu:fk91e06; si:ch73-336h18.1
Summary
Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL9P (F-box and leucine rich repeat protein, pseudogene). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See fbxl9 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (17478703..17494393, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (17382303..17398764, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene E2F transcription factor 4 Neighboring gene engulfment and cell motility 3 Neighboring gene tripartite motif containing 35-40 Neighboring gene matrix metallopeptidase 15a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
leucine-rich repeat-containing protein 29; F-box/LRR-repeat protein 2
Names
leucine rich repeat containing 29

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    17478703..17494393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009297959.4 → XP_009296234.1  F-box/LRR-repeat protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AZN4
    Conserved Domains (3) summary
    cd09293
    Location:215 → 427
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:331 → 359
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:4 → 49
    F-box-like; F-box-like

  2. XM_001339783.9 → XP_001339819.4  F-box/LRR-repeat protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M1PUS3, X1WDA2
    Related
    ENSDARP00000128199.1, ENSDART00000154134.2
    Conserved Domains (3) summary
    cd09293
    Location:215 → 427
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:331 → 359
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:4 → 49
    F-box-like; F-box-like
Nucleotide Protein Strain
Heading Accession and Version

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