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ppp1r3da protein phosphatase 1, regulatory subunit 3Da [ Danio rerio (zebrafish) ]

Gene ID: 799144, updated on 4-Jan-2025

Summary

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Official Symbol
ppp1r3daprovided by ZNC
Official Full Name
protein phosphatase 1, regulatory subunit 3Daprovided by ZNC
Primary source
ZFIN:ZDB-GENE-080204-75
See related
Ensembl:ENSDARG00000077513 AllianceGenome:ZFIN:ZDB-GENE-080204-75
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:174896
Summary
Predicted to enable myosin phosphatase activity. Orthologous to human PPP1R3D (protein phosphatase 1 regulatory subunit 3D). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See ppp1r3da in Genome Data Viewer
Location:
chromosome: 23
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (12160981..12162746)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (12226011..12227776)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene tubulin tyrosine ligase-like family, member 9 Neighboring gene family with sequence similarity 217 member Ba Neighboring gene synaptonemal complex protein 2 Neighboring gene phosphatase and actin regulator 3a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Different physiological roles of insulin receptors in mediating nutrient metabolism in zebrafish. Yang BY, et al. Am J Physiol Endocrinol Metab, 2018 Jul 1. PMID 29351486
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables myosin phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein phosphatase 1, regulatory subunit 3Da
Names
protein phosphatase 1, regulatory (inhibitor) subunit 3D a
NP_001103882.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110412.2 → NP_001103882.2  protein phosphatase 1, regulatory subunit 3Da

    Status: VALIDATED

    Source sequence(s)
    EH499792, EH572767
    UniProtKB/TrEMBL
    A0A8M1NFA7
    Related
    ENSDARP00000118761.1, ENSDART00000136046.2
    Conserved Domains (1) summary
    pfam03370
    Location:176 → 280
    CBM_21; Carbohydrate/starch-binding module (family 21)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    12160981..12162746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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