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si:dkey-247k7.2 si:dkey-247k7.2 [ Danio rerio (zebrafish) ]

Gene ID: 797677, updated on 9-Dec-2024

Summary

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Official Symbol
si:dkey-247k7.2provided by ZNC
Official Full Name
si:dkey-247k7.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-031118-45
See related
Ensembl:ENSDARG00000103199 AllianceGenome:ZFIN:ZDB-GENE-031118-45
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fk35f04; wu:fk35f04
Summary
Is expressed in post-vent region. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See si:dkey-247k7.2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (23339390..23346083, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (23424358..23431091, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene ephrin-A1b Neighboring gene solute carrier family 50 member 1 Neighboring gene tripartite motif containing 46a Neighboring gene keratinocyte associated protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Methyl mercury suppresses the formation of the tail primordium in developing zebrafish embryos. Yang L, et al. Toxicol Sci, 2010 Jun. PMID 20181659
  2. Transcriptional signature of accessory cells in the lateral line, using the Tnk1bp1:EGFP transgenic zebrafish line. Behra M, et al. BMC Dev Biol, 2012 Jan 24. PMID 22273551, Free PMC Article
  3. Gene responses in the central nervous system of zebrafish embryos exposed to the neurotoxicant methyl mercury. Ho NY, et al. Environ Sci Technol, 2013 Apr 2. PMID 23458150

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein LOC797677

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386358.1 → NP_001373287.1  uncharacterized protein LOC797677 precursor

    Status: VALIDATED

    Source sequence(s)
    CT030031
    UniProtKB/TrEMBL
    A0A0R4IBI5, A0A8M1Q1N1
    Related
    ENSDARP00000131071.1, ENSDART00000160546.2
    Conserved Domains (1) summary
    cl08302
    Location:72 → 102
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    23339390..23346083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials