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thsd1 thrombospondin type 1 domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 797520, updated on 12-Sep-2024

Summary

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Gene symbol
thsd1
Gene description
thrombospondin type 1 domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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Genomic context

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See thsd1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (24678122..24686648)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (24708123..24717384)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene proline and serine rich 1 Neighboring gene vacuolar protein sorting 36 homolog Neighboring gene fibrinogen like 1B Neighboring gene transmembrane phosphatase with tensin homology

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
thrombospondin type-1 domain-containing protein 1
Names
thrombospondin, type I, domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    24678122..24686648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001337954.8 → XP_001337990.3  thrombospondin type-1 domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8M1PZ64
    Conserved Domains (1) summary
    smart00209
    Location:342 → 391
    TSP1; Thrombospondin type 1 repeats
Nucleotide Protein
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