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LOC797305 alanine--tRNA ligase, cytoplasmic-like [ Danio rerio (zebrafish) ]

Gene ID: 797305, updated on 3-Dec-2024

Summary

Gene symbol
LOC797305
Gene description
alanine--tRNA ligase, cytoplasmic-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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Genomic context

See LOC797305 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (18810974..18821345, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (18829439..18831224, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene alanine--tRNA ligase, cytoplasmic-like Neighboring gene uncharacterized LOC108179972 Neighboring gene uncharacterized LOC797383 Neighboring gene transglutaminase 2, like

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
alanine--tRNA ligase, cytoplasmic-like; uncharacterized protein LOC797305

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    18810974..18821345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017352041.3XP_017207530.2  alanine--tRNA ligase, cytoplasmic-like isoform X2

    UniProtKB/TrEMBL
    A0A8M6Z2Q9
  2. XM_068214898.1XP_068070999.1  alanine--tRNA ligase, cytoplasmic-like isoform X2

    UniProtKB/TrEMBL
    A0A8M6Z2Q9
  3. XM_068214896.1XP_068070997.1  uncharacterized protein LOC797305 isoform X1

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395020.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    93821..117535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068218915.1XP_068075016.1  alanine--tRNA ligase, cytoplasmic-like isoform X3

  2. XM_068218916.1XP_068075017.1  alanine--tRNA ligase, cytoplasmic-like isoform X3