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slc5a6b solute carrier family 5 member 6 [ Danio rerio (zebrafish) ]

Gene ID: 796312, updated on 4-Jan-2025

Summary

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Official Symbol
slc5a6bprovided by ZNC
Official Full Name
solute carrier family 5 member 6provided by ZNC
Primary source
ZFIN:ZDB-GENE-050913-86
See related
Ensembl:ENSDARG00000014599 AllianceGenome:ZFIN:ZDB-GENE-050913-86
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
slc5a6; wu:fa19f06; zgc:114067
Summary
Predicted to enable sodium-dependent multivitamin transmembrane transporter activity. Predicted to be involved in biotin transport; pantothenate transmembrane transport; and sodium ion transport. Predicted to act upstream of or within monoatomic ion transport and transmembrane transport. Predicted to be located in plasma membrane. Orthologous to human SLC5A6 (solute carrier family 5 member 6). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See slc5a6b in Genome Data Viewer
Location:
chromosome: 17
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (6535924..6556143)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (6378754..6398913)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 5 gamma b Neighboring gene tumor protein p53 inducible protein 3 Neighboring gene centromere protein O Neighboring gene ankyrin repeat domain 66 Neighboring gene adhesion G protein-coupled receptor F3a Neighboring gene tudor domain containing 6b Neighboring gene uncharacterized LOC137488155

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC114067, MGC174254

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables sodium-dependent multivitamin transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biotin transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
  
involved_in pantothenate transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in sodium ion transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within sodium ion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
solute carrier family 5 member 6
Names
solute carrier family 5 (sodium-dependent vitamin transporter), member 6
solute carrier family 5 (sodium-dependent vitamin transporter), member 6b
solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025528.2 → NP_001020699.1  solute carrier family 5 member 6

    See identical proteins and their annotated locations for NP_001020699.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097129
    UniProtKB/TrEMBL
    Q4V901
    Related
    ENSDARP00000062951.4, ENSDART00000062952.5
    Conserved Domains (1) summary
    cl00456
    Location:9 → 532
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    6535924..6556143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005158575.5 → XP_005158632.1  solute carrier family 5 member 6 isoform X1

    See identical proteins and their annotated locations for XP_005158632.1

    UniProtKB/TrEMBL
    A0A8M2B4Z6, B7ZVD9
    Related
    ENSDARP00000152601.1, ENSDART00000191681.1
    Conserved Domains (1) summary
    cl00456
    Location:9 → 532
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_005158576.5 → XP_005158633.1  solute carrier family 5 member 6 isoform X2

    See identical proteins and their annotated locations for XP_005158633.1

    UniProtKB/TrEMBL
    A0A8M2B5H5, A9JSZ5
    Related
    ENSDARP00000110412.2, ENSDART00000121789.3
    Conserved Domains (1) summary
    cl00456
    Location:9 → 531
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_068214465.1 → XP_068070566.1  solute carrier family 5 member 6 isoform X3

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394974.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    169181..189776
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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