si:dkey-57a22.15 si:dkey-57a22.15 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:dkey-57a22.15provided by ZNC
Official Full Name: si:dkey-57a22.15provided by ZNC
Primary source: ZFIN:ZDB-GENE-081104-427
See related: Ensembl:ENSDARG00000093318 AllianceGenome:ZFIN:ZDB-GENE-081104-427
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Human ortholog(s) of this gene implicated in cataract; cataract 2 multiple types; cataract 39 multiple types; cataract 4 multiple types; and cataract 7. Orthologous to several human genes including CRYGA (crystallin gamma A); CRYGB (crystallin gamma B); and CRYGC (crystallin gamma C). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

See si:dkey-57a22.15 in Genome Data Viewer

Location:: chromosome: 9

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (22003942..22004833)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (22193073..22193964)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables structural constituent of eye lens	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in lens development in camera-type eye	IBA Inferred from Biological aspect of Ancestor more info
involved_in visual perception	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC795575

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001123311.1 → NP_001116783.1 uncharacterized protein LOC795575

Status: PREDICTED

Source sequence(s)

CR536604

UniProtKB/TrEMBL

A0A8M1NG77, B0UYP0

Related

ENSDARP00000085446.5, ENSDART00000091013.6

Conserved Domains (2) summary

smart00247
Location:3 → 82

XTALbg; Beta/gamma crystallins

pfam00030
Location:90 → 171

Crystall; Beta/Gamma crystallin