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olfcd1 olfactory receptor C family, d1 [ Danio rerio (zebrafish) ]

Gene ID: 795062, updated on 4-Jan-2025

Summary

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Official Symbol
olfcd1provided by ZNC
Official Full Name
olfactory receptor C family, d1provided by ZNC
Primary source
ZFIN:ZDB-GENE-100721-9
See related
Ensembl:ENSDARG00000008095 AllianceGenome:ZFIN:ZDB-GENE-100721-9
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-229c8.2
Summary
Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See olfcd1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (33212558..33216764)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (33237833..33242813)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor C family, n1 Neighboring gene olfactory receptor C family, x1 Neighboring gene olfactory receptor C family, x2 Neighboring gene olfactory receptor C family, x3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The repertoire of olfactory C family G protein-coupled receptors in zebrafish: candidate chemosensory receptors for amino acids. Alioto TS, et al. BMC Genomics, 2006 Dec 8. PMID 17156446, Free PMC Article
  2. Evolution and origin of vomeronasal-type odorant receptor gene repertoire in fishes. Hashiguchi Y, et al. BMC Evol Biol, 2006 Oct 3. PMID 17014738, Free PMC Article
  3. Evolution of vomeronasal-type odorant receptor genes in the zebrafish genome. Hashiguchi Y, et al. Gene, 2005 Dec 5. PMID 16226854
  4. Expansion of vomeronasal receptor genes (OlfC) in the evolution of fright reaction in Ostariophysan fishes. Yang L, et al. Commun Biol, 2019. PMID 31263779, Free PMC Article
  5. Overlapping but distinct topology for zebrafish V2R-like olfactory receptors reminiscent of odorant receptor spatial expression zones. Ahuja G, et al. BMC Genomics, 2018 May 23. PMID 29792162, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
extracellular calcium-sensing receptor
Names
Dr10-2
J03
sub 17_1
v2rj3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    33212558..33216764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467838.2 → XP_021323513.1  extracellular calcium-sensing receptor

    UniProtKB/TrEMBL
    A0A8M9PAH3
    Related
    ENSDARP00000002848.10, ENSDART00000028134.11
    Conserved Domains (3) summary
    pfam07562
    Location:512 → 564
    NCD3G; Nine Cysteines Domain of family 3 GPCR
    cd15283
    Location:585 → 835
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    cl10011
    Location:43 → 503
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395034.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    27336..31542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001335124.6 → XP_001335160.3  extracellular calcium-sensing receptor

    UniProtKB/TrEMBL
    A0A8M9PAH3
    Conserved Domains (3) summary
    pfam07562
    Location:512 → 564
    NCD3G; Nine Cysteines Domain of family 3 GPCR
    cd15283
    Location:585 → 835
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    cl10011
    Location:43 → 503
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
Nucleotide Protein
Heading Accession and Version

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