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si:dkey-261j15.2 si:dkey-261j15.2 [ Danio rerio (zebrafish) ]

Gene ID: 794828, updated on 14-Nov-2024

Summary

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Official Symbol
si:dkey-261j15.2provided by ZNC
Official Full Name
si:dkey-261j15.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-120215-69
See related
Ensembl:ENSDARG00000096411 AllianceGenome:ZFIN:ZDB-GENE-120215-69
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc32g12; wu:fc32g12
Orthologs
all
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Genomic context

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See si:dkey-261j15.2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (6669368..6673729, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (6512199..6516560, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene BCL11 transcription factor A b Neighboring gene zgc:113227 Neighboring gene coiled-coil domain containing 85A, like Neighboring gene si:ch211-85n16.3 Neighboring gene SEC23 homolog B, coat complex II component

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables phosphoribosylaminoimidazolesuccinocarboxamide synthase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in 'de novo' IMP biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC794828

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001326584.1 → NP_001313513.1  uncharacterized protein LOC794828

    Status: VALIDATED

    Source sequence(s)
    CR926129, EB926611, EH539665, EH563558
    UniProtKB/TrEMBL
    A0A8M1P2U9, I3IST1
    Related
    ENSDARP00000125975.1, ENSDART00000150995.2
    Conserved Domains (1) summary
    pfam13837
    Location:9 → 82
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    6669368..6673729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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