U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

si:dkey-175g6.2 si:dkey-175g6.2 [ Danio rerio (zebrafish) ]

Gene ID: 793455, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
si:dkey-175g6.2provided by ZNC
Official Full Name
si:dkey-175g6.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8061
See related
Ensembl:ENSDARG00000086665 AllianceGenome:ZFIN:ZDB-GENE-030131-8061
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj49c03; wu:fj49c03
Summary
Predicted to enable neuropeptide hormone activity. Orthologous to human VGF (VGF nerve growth factor inducible). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See si:dkey-175g6.2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (23022252..23026533)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (23000607..23073482)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110440071 Neighboring gene uncharacterized LOC793236 Neighboring gene uncharacterized LOC137496586 Neighboring gene solute carrier family 25 member 1a Neighboring gene notchless homolog 1 (Drosophila)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables neuropeptide hormone activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
neurosecretory protein VGF

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    23022252..23026533
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001333183.6 → XP_001333219.2  neurosecretory protein VGF

    UniProtKB/TrEMBL
    A0A8M1PRV3
    Related
    ENSDARP00000139745.1, ENSDART00000138955.3
    Conserved Domains (1) summary
    PHA03247
    Location:372 → 564
    PHA03247; large tegument protein UL36; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials