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vstm2b V-set and transmembrane domain containing 2B [ Danio rerio (zebrafish) ]

Gene ID: 793103, updated on 9-Dec-2024

Summary

Official Symbol
vstm2bprovided by ZNC
Official Full Name
V-set and transmembrane domain containing 2Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8082
See related
Ensembl:ENSDARG00000098810 AllianceGenome:ZFIN:ZDB-GENE-030131-8082
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj51d06; wu:fj51d06; zgc:194678
Summary
Predicted to be located in plasma membrane. Predicted to be active in membrane. Orthologous to human VSTM2B (V-set and transmembrane domain containing 2B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See vstm2b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (45040526..45075903, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (44701301..44736678, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137490300 Neighboring gene cytosolic iron-sulfur assembly component 2B Neighboring gene ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 Neighboring gene uncharacterized LOC137496205

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
V-set and transmembrane domain-containing protein 2B
Names
V-set and transmembrane domain-containing

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128778.1NP_001122250.1  V-set and transmembrane domain-containing protein 2B precursor

    See identical proteins and their annotated locations for NP_001122250.1

    Status: PROVISIONAL

    Source sequence(s)
    BC163699
    UniProtKB/TrEMBL
    B3DK21, B3DK28, F6NQW4
    Related
    ENSDARP00000101896.1, ENSDART00000110590.3
    Conserved Domains (2) summary
    smart00410
    Location:31141
    IG_like; Immunoglobulin like
    cl11960
    Location:29147
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    45040526..45075903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)