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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 7922332, updated on 18-Sep-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
TAIR:AT3G17712
Locus tag
AT3G17712
See related
Araport:AT3G17712
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (6056870..6060330)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide-binding transporter 1 Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene miscRNA Neighboring gene S-adenosylmethionine decarboxylase proenzyme Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001161148.2
NM_001202991.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_001154620.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17740.1); Has 265 Blast hits to 264 proteins in 123 species: Archae - 1; Bacteria - 0; Metazoa - 116; Fungi - 89; Plants - 33; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
NP_001189920.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17740.1).
NP_001189921.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17740.1).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6056870..6060330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001202992.1 → NP_001189921.1  uncharacterized protein AT3G17712 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189921.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XD45, F4J6D7
    Conserved Domains (1) summary
    pfam08424
    Location:311 → 677
    NRDE-2; NRDE-2, necessary for RNA interference

  2. NM_001161148.2 → NP_001154620.1  uncharacterized protein AT3G17712 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154620.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F881, F4J6D8
    Conserved Domains (1) summary
    pfam08424
    Location:280 → 671
    NRDE-2; NRDE-2, necessary for RNA interference

  3. NM_001202991.1 → NP_001189920.1  uncharacterized protein AT3G17712 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189920.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F881, F4J6D9
    Conserved Domains (1) summary
    pfam08424
    Location:280 → 646
    NRDE-2; NRDE-2, necessary for RNA interference
Nucleotide Protein
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