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D730003K21Rik RIKEN cDNA D730003K21 gene [ Mus musculus (house mouse) ]

Gene ID: 78580, updated on 22-Oct-2024

Summary

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Official Symbol
D730003K21Rikprovided by MGI
Official Full Name
RIKEN cDNA D730003K21 geneprovided by MGI
Primary source
MGI:MGI:1925830
See related
Ensembl:ENSMUSG00000110752 AllianceGenome:MGI:1925830
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See D730003K21Rik in Genome Data Viewer
Location:
9; 9 F3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (116156391..116168727)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (116327323..116339659)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_25415 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:116123514-116123697 Neighboring gene STARR-positive B cell enhancer mm9_chr9:116125815-116126116 Neighboring gene STARR-positive B cell enhancer ABC_E10589 Neighboring gene predicted gene 4668 Neighboring gene STARR-positive B cell enhancer ABC_E6810 Neighboring gene STARR-positive B cell enhancer ABC_E1396 Neighboring gene STARR-seq mESC enhancer starr_25416 Neighboring gene STARR-seq mESC enhancer starr_25417 Neighboring gene Tgfbr2 Hedgehog-responsive enhancer Neighboring gene predicted gene, 31410 Neighboring gene STARR-seq mESC enhancer starr_25420 Neighboring gene STARR-seq mESC enhancer starr_25421 Neighboring gene STARR-seq mESC enhancer starr_25422 Neighboring gene STARR-seq mESC enhancer starr_25424 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:116275388-116275600 Neighboring gene STARR-positive B cell enhancer ABC_E2311 Neighboring gene predicted gene, 31559 Neighboring gene STARR-seq mESC enhancer starr_25427 Neighboring gene STARR-seq mESC enhancer starr_25433 Neighboring gene predicted gene, 39449

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    116156391..116168727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_379940.3 RNA Sequence

    Related
    ENSMUST00000340944.1

  2. XR_871324.2 RNA Sequence

  3. XR_379941.3 RNA Sequence

    Related
    ENSMUST00000340938.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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