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HMPREF0673_RS00340 sigma-54-dependent transcriptional regulator [ Leyella stercorea DSM 18206 ]

Gene ID: 78335993, updated on 9-Jan-2025

Summary

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Gene symbol
HMPREF0673_RS00340
Gene description
sigma-54-dependent transcriptional regulator
Locus tag
HMPREF0673_RS00340
Gene type
protein coding
Organism
Leyella stercorea DSM 18206 (strain: DSM 18206, nat-host: Homo sapiens, type-material: type strain of Prevotella stercorea)
Lineage
Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Leyella
Old locus tag
HMPREF0673_00074
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Genomic context

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NZ_JH379341.1Genomic Context describing neighboring genes Neighboring gene DUF1896 domain-containing protein Neighboring gene N-6 DNA methylase Neighboring gene ATP-binding protein Neighboring gene tetracycline resistance ribosomal protection protein Tet(Q) Neighboring gene dihydrofolate reductase family protein Neighboring gene RteC domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_JH379341.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Domain architectures of sigma54-dependent transcriptional activators. Studholme DJ, et al. J Bacteriol, 2003 Mar. PMID 12618438, Free PMC Article
  2. Diversity of structure and function of response regulator output domains. Galperin MY. Curr Opin Microbiol, 2010 Apr. PMID 20226724, Free PMC Article
  3. Signal sensing by sigma 54-dependent regulators: derepression as a control mechanism. Shingler V. Mol Microbiol, 1996 Feb. PMID 8830233
  4. Two-component signal transduction. Stock AM, et al. Annu Rev Biochem, 2000. PMID 10966457

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
sigma-54-dependent transcriptional regulator

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_JH379341.1 Reference assembly

    Range
    18626..19948
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_004291471.1 MULTISPECIES: sigma-54-dependent transcriptional regulator [FCB group]

    See identical proteins and their annotated locations for WP_004291471.1

    UniProtKB/TrEMBL
    A0A015URP6, A0A016AT27, A0A078RVV6, A0A095Y9K9, A0A0B4N125, A0A0J6CGW6, A0A0J9FIJ0, A0A0P0GQ97, A0A134BEJ8, A0A137SZ58, A0A139LMV4, A0A143XYL1, A0A173S8E2, A0A174HAM4, A0A174QKV4, A0A174SA63, A0A174VFT1, A0A174VP73, A0A1C5VHG9, A0A1C7H036, A0A1F0IJB7, A0A1H5XQW2, A0A1M5GDP8, A0A1M6G067, A0A1M6XEU1, A0A1Y4GMS9, A0A1Y4JMC8, A0A1Y4Q4L6, A0A223HIJ0, A0A254RDU7, A0A285SCB8, A0A2D3NEC1, A0A2V1IJ31, A0A372YVV3, A0A374A243, A0A374UQT9, A0A374V9C5, A0A374WPB9, A0A379E0X5, A0A379MT03, A0A396M3G3, A0A3A5PAP4, A0A3A5QKG4, A0A3A5SA93, A0A3A5TCL3, A0A3A5YWX2, A0A3A5ZD98, A0A3A5ZJ80, A0A3D8HHM9, A0A3E4ZJ77, A0A3L7ZMF4, A0A3L8AA49, A0A3Q9INB8, A0A3R6NWX4, A0A3R6V7M1, A0A401LTW6, A0A412C6Y3, A0A412CRN8, A0A412TSJ0, A0A412VL44, A0A412X393, A0A414L174, A0A415TFV2, A0A416SV80, A0A449I6F3, A0A496C2N9, A0A496CXP4, A0A496DNM8, A0A4Q0TWH3, A0A4Q5GJT1, A0A4R4GGK7, A0A4V3R719, A0A5B3GFE1, A0A5B3GYQ5, A0A6N4H8G9, A0A7D6XTU1, A0A7G1HQA7, A0A7J0AUW1, A0A9Q5SPZ1, A0AA90ZWU4, A0AAN5AYL7, A0AAQ0QAW0, A0AAW3FIZ0, B0NP35, B3C7C4, B3JIW8, B5D3F0, B6VWH2, C3R2Y9, D0TQ40, D1JU82, D4VJ89, D7J973, E4MAW1, F3PMZ9, F7M264, G6ATZ0, I4Z7N5, I9ACA4, I9HWC1, I9QC04, I9U958, K0WVE6, K5Z7X0, K6A8M3, Q56VE6, Q650D7, R9H0J0, R9HP50, W0EWE5
    Conserved Domains (1) summary
    COG2204
    Location:1 → 433
    AtoC; DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms]
Nucleotide Protein
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