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HMPREF9448_RS00525 RagB/SusD family nutrient uptake outer membrane protein [ Barnesiella intestinihominis YIT 11860 ]

Gene ID: 77847482, updated on 11-Dec-2024

Summary

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Gene symbol
HMPREF9448_RS00525
Gene description
RagB/SusD family nutrient uptake outer membrane protein
Locus tag
HMPREF9448_RS00525
Gene type
protein coding
Organism
Barnesiella intestinihominis YIT 11860 (strain: YIT 11860, type-material: type strain of Barnesiella intestinihominis)
Lineage
Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Barnesiellaceae; Barnesiella
Old locus tag
HMPREF9448_00107
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Genomic context

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NZ_JH815203.1Genomic Context describing neighboring genes Neighboring gene FecR family protein Neighboring gene TonB-dependent receptor Neighboring gene DUF4832 domain-containing protein Neighboring gene FISUMP domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_JH815203.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure of RagB, a major immunodominant outer-membrane surface receptor antigen of Porphyromonas gingivalis. Goulas T, et al. Mol Oral Microbiol, 2016 Dec. PMID 26441291, Free PMC Article
  2. Glycan recognition by the Bacteroidetes Sus-like systems. Bolam DN, et al. Curr Opin Struct Biol, 2012 Oct. PMID 22819666

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
RagB/SusD family nutrient uptake outer membrane protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_JH815203.1 Reference assembly

    Range
    136824..138353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_008860737.1 MULTISPECIES: RagB/SusD family nutrient uptake outer membrane protein [Barnesiella]

    See identical proteins and their annotated locations for WP_008860737.1

    UniProtKB/TrEMBL
    K0X3L3
    Conserved Domains (2) summary
    pfam07980
    Location:279 → 508
    SusD_RagB; SusD family
    cl21747
    Location:37 → 469
    SusD; starch binding outer membrane protein SusD
Nucleotide Protein
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