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zgc:152816 zgc:152816 [ Danio rerio (zebrafish) ]

Gene ID: 777712, updated on 12-Sep-2024

Summary

Official Symbol
zgc:152816provided by ZNC
Official Full Name
zgc:152816provided by ZNC
Primary source
ZFIN:ZDB-GENE-061110-40
See related
Ensembl:ENSDARG00000101808
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92551; si:ch211-271b14.1
Orthologs
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Genomic context

See zgc:152816 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (67835595..67860319)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (67157932..67182603)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E family member 1B Neighboring gene zgc:175280 Neighboring gene transgelin 3a Neighboring gene abhydrolase domain containing 10, depalmitoylase a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
uncharacterized protein LOC777712

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077760.2NP_001071228.2  uncharacterized protein LOC777712

    Status: VALIDATED

    Source sequence(s)
    CU861887
    UniProtKB/TrEMBL
    A0AUP8
    Related
    ENSDARP00000136346.1, ENSDART00000159386.2
    Conserved Domains (5) summary
    smart00451
    Location:865899
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:332405
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12714
    Location:234307
    RRM1_MATR3; RNA recognition motif 1 in vertebrate matrin-3
    cl17169
    Location:608663
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl26511
    Location:60153
    Neuromodulin_N; Gap junction protein N-terminal region

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    67835595..67860319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)