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zgc:153935 zgc:153935 [ Danio rerio (zebrafish) ]

Gene ID: 777611, updated on 9-Dec-2024

Summary

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Official Symbol
zgc:153935provided by ZNC
Official Full Name
zgc:153935provided by ZNC
Primary source
ZFIN:ZDB-GENE-061103-148
See related
Ensembl:ENSDARG00000036888 AllianceGenome:ZFIN:ZDB-GENE-061103-148
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to act upstream of or within inflammatory response and innate immune response. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See zgc:153935 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (27714932..27735926, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (27271714..27295422, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene hyaluronoglucosaminidase 6 Neighboring gene si:ch211-91p5.3 Neighboring gene WASP like actin nucleation promoting factor a Neighboring gene leiomodin 2 (cardiac) a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within inflammatory response IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within innate immune response IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC777611

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430958.1 → NP_001417887.1  uncharacterized protein LOC777611

    Status: VALIDATED

    Source sequence(s)
    CR381620
    UniProtKB/TrEMBL
    A0A8M9P6H5

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    27714932..27735926 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017354097.3 → XP_017209586.1  uncharacterized protein LOC777611 isoform X1

    UniProtKB/TrEMBL
    A0A8M9P6H5
    Conserved Domains (2) summary
    cd08330
    Location:335 → 411
    CARD_ASC_NALP1; Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins
    pfam15112
    Location:9 → 313
    DUF4559; Domain of unknown function (DUF4559)

  2. XM_068217417.1 → XP_068073518.1  uncharacterized protein LOC777611 isoform X2

    UniProtKB/TrEMBL
    A0A8N7UYE3, A0JML0
    Related
    ENSDARP00000146474.1, ENSDART00000190154.1

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395207.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    144938..152834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001077719.1: Suppressed sequence

    Description
    NM_001077719.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

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