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znhit2 zinc finger, HIT-type containing 2 [ Danio rerio (zebrafish) ]

Gene ID: 777606, updated on 9-Dec-2024

Summary

Official Symbol
znhit2provided by ZNC
Official Full Name
zinc finger, HIT-type containing 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-061103-46
See related
Ensembl:ENSDARG00000030805 AllianceGenome:ZFIN:ZDB-GENE-061103-46
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:152924
Summary
Is expressed in telencephalon. Orthologous to human ZNHIT2 (zinc finger HIT-type containing 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See znhit2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (26982254..26985231, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (27020541..27023518, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene VPS51 subunit of GARP complex Neighboring gene transmembrane 7 superfamily member 2 Neighboring gene mitochondrial ribosomal protein L49 Neighboring gene zgc:193742 Neighboring gene FAU ubiquitin like and ribosomal protein S30 fusion b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
zinc finger HIT domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077618.1NP_001071086.1  zinc finger HIT domain-containing protein 2

    See identical proteins and their annotated locations for NP_001071086.1

    Status: PROVISIONAL

    Source sequence(s)
    BC125835
    UniProtKB/TrEMBL
    A0JMD6
    Related
    ENSDARP00000050584.5, ENSDART00000050585.6
    Conserved Domains (1) summary
    pfam04438
    Location:78104
    zf-HIT; HIT zinc finger

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    26982254..26985231 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394787.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    205448..208439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395289.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    7667..10644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)