zgc:153169 zgc:153169 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:153169provided by ZNC
Official Full Name: zgc:153169provided by ZNC
Primary source: ZFIN:ZDB-GENE-060929-764
See related: Ensembl:ENSDARG00000034605 AllianceGenome:ZFIN:ZDB-GENE-060929-764
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb34h03; wu:fb34h03; si:zc101n13.1; si:ch211-101n13.1
Summary: Predicted to enable N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity. Predicted to be involved in protein deglycosylation. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 13

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (24394379..24402100)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (24263912..24271655)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

AI436940 (e-PCR)
- UniSTS:206605

fb34h03.x1 (e-PCR)
- UniSTS:190451

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity	IBA Inferred from Biological aspect of Ancestor more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC767799

Names: asparaginase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001076766.2 → NP_001070234.2 uncharacterized protein LOC767799

Status: VALIDATED

Source sequence(s)

AL772154, AL772388

UniProtKB/TrEMBL

A0A8M1NBC1, F1QE55

Related

ENSDARP00000091974.4, ENSDART00000101200.5

Conserved Domains (1) summary

cd04513
Location:4 → 274

Glycosylasparaginase; Glycosylasparaginase and similar proteins

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007124.7 Reference GRCz11 Primary Assembly

Range

24394379..24402100

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009307352.4 → XP_009305627.1 uncharacterized protein LOC767799 isoform X1

UniProtKB/TrEMBL

A0A8M3BEP7

Conserved Domains (1) summary

cd04513
Location:5 → 258

Glycosylasparaginase; Glycosylasparaginase and similar proteins