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4930558K02Rik RIKEN cDNA 4930558K02 gene [ Mus musculus (house mouse) ]

Gene ID: 75368, updated on 27-Nov-2024

Summary

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Official Symbol
4930558K02Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930558K02 geneprovided by MGI
Primary source
MGI:MGI:1922618
See related
Ensembl:ENSMUSG00000086277 AllianceGenome:MGI:1922618
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C1orf105 (chromosome 1 open reading frame 105). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 1.7) and cerebellum adult (RPKM 0.1) See more
Orthologs
human all
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Genomic context

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See 4930558K02Rik in Genome Data Viewer
Location:
1 H2.1; 1 69.95 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (161769658..161809940, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (161942089..161982371, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10050 Neighboring gene cyclin-dependent kinase 7 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2578 Neighboring gene SUN domain containing ossification factor Neighboring gene STARR-positive B cell enhancer ABC_E7766 Neighboring gene STARR-seq mESC enhancer starr_02830 Neighboring gene predicted gene, 31925 Neighboring gene STARR-positive B cell enhancer ABC_E4367 Neighboring gene STARR-positive B cell enhancer mm9_chr1:163906574-163906875 Neighboring gene STARR-seq mESC enhancer starr_02833 Neighboring gene RIKEN cDNA 2810442N19 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:163930050-163930233 Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class C Neighboring gene dynamin 3 Neighboring gene STARR-seq mESC enhancer starr_02834 Neighboring gene VISTA enhancer mm712 Neighboring gene STARR-seq mESC enhancer starr_02835 Neighboring gene STARR-seq mESC enhancer starr_02836 Neighboring gene microRNA 199a-2 Neighboring gene dynamin 3, opposite strand

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C1orf105 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001204904.1 → NP_001191833.1  uncharacterized protein C1orf105 homolog isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC120180, CF105154
    Consensus CDS
    CCDS56649.1
    UniProtKB/TrEMBL
    E0CXC6
    Related
    ENSMUSP00000124751.2, ENSMUST00000162676.2
    Conserved Domains (1) summary
    pfam15081
    Location:17 → 181
    DUF4548; Domain of unknown function (DUF4548)

  2. NM_001204905.1 → NP_001191834.1  uncharacterized protein C1orf105 homolog isoform 2

    See identical proteins and their annotated locations for NP_001191834.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate 5' exon, resulting in a downstream AUG start codon, as compared to variant 1. The resulting isoform (2) has a shorter N-terminus, as compared to isoform 1.
    Source sequence(s)
    AC120180
    Related
    ENSMUST00000141397.2
    Conserved Domains (1) summary
    pfam15081
    Location:1 → 132
    DUF4548; Domain of unknown function (DUF4548)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    161769658..161809940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006497015.2 → XP_006497078.1  uncharacterized protein C1orf105 homolog isoform X1

    Conserved Domains (1) summary
    pfam15081
    Location:17 → 153
    DUF4548; Domain of unknown function (DUF4548)

  2. XM_030243265.2 → XP_030099125.1  uncharacterized protein C1orf105 homolog isoform X2

    Conserved Domains (1) summary
    pfam15081
    Location:1 → 132
    DUF4548; Domain of unknown function (DUF4548)
Nucleotide Protein Strain
Heading Accession and Version

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