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ypdB two-component system response regulator YpdB [ Shigella dysenteriae ]

Gene ID: 75172500, updated on 3-Dec-2024

Summary

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Gene symbol
ypdB
Gene description
two-component system response regulator YpdB
Locus tag
HUZ68_RS15900
Gene type
protein coding
Organism
Shigella dysenteriae (strain: SWHEFF_49)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Old locus tag
HUZ68_15750
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Genomic context

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NZ_CP055055.1Genomic Context describing neighboring genes Neighboring gene alanine transaminase Neighboring gene two-component system sensor histidine kinase YpdA Neighboring gene AraC family transcriptional regulator Neighboring gene phosphoenolpyruvate--protein phosphotransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP055055.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of a target gene and activating stimulus for the YpdA/YpdB histidine kinase/response regulator system in Escherichia coli. Fried L, et al. J Bacteriol, 2013 Feb. PMID 23222720, Free PMC Article
  2. Identification of a novel nutrient-sensing histidine kinase/response regulator network in Escherichia coli. Behr S, et al. J Bacteriol, 2014 Jun. PMID 24659770, Free PMC Article
  3. High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria. Che Y, et al. Microbiome, 2022 Jan 25. PMID 35078531, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
two-component system response regulator YpdB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP055055.1 Reference assembly

    Range
    3324463..3325197
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_001295458.1 MULTISPECIES: two-component system response regulator YpdB [Gammaproteobacteria]

    See identical proteins and their annotated locations for WP_001295458.1

    UniProtKB/Swiss-Prot
    P0AE39, P0AE40, P0AE41, P77742
    UniProtKB/TrEMBL
    A0A0E0XWJ1, A0A0H3PP77, A0A0H9NZ77, A0A0J3YST0, A0A140N7F1, A0A1Q8M3L1, A0A1W2N5B3, A0A2A2XLL2, A0A3R0JQ09, A0A3T2USH7, A0A4P8BZV5, A0A4V1CTK7, A0A6H2GPG3, A0A6N3QLH1, A0A6N3R5A9, A0A7I0L008, A0A7I6H0X7, A0A7U9IY09, A0A7U9QHC9, A0A7W4KPL9, A0A822PIS4, A0A828U616, A0A836NCP0, A0A979GGE0, A0A9P2I929, A0A9P2UYN4, A0A9Q6UY12, A0A9X0Q0X6, A0AAD2NSE4, A0AAD2YVF3, A0AAD2Z6Y0, A0AAN1AFM3, A0AAN4NSR6, A0AAP9SKB5, A0AAV3H5H0, A0AAV3I3N4, A7ZPJ1, B2TWY0, B7LCD3, B7N5Y2, B7UG91, C3T1E2, D2AG72, D3H242, E0IXP1, I6CIK5, I6DXP2, Q0T2B7, Q31Y90, Q3YZE9, S1PY76, W1F067
    Conserved Domains (1) summary
    COG3279
    Location:1 → 244
    LytT; DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction mechanisms]
Nucleotide Protein
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