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ybdG mechanosensitive ion channel YbdG [ Shigella dysenteriae ]

Gene ID: 75170579, updated on 3-Dec-2024

Summary

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Gene symbol
ybdG
Gene description
mechanosensitive ion channel YbdG
Locus tag
HUZ68_RS06295
Gene type
protein coding
Organism
Shigella dysenteriae (strain: SWHEFF_49)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Old locus tag
HUZ68_06240
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Genomic context

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NZ_CP055055.1Genomic Context describing neighboring genes Neighboring gene Cu(+)/Ag(+) efflux RND transporter permease subunit CusA Neighboring gene phenylalanine transporter Neighboring gene MmcQ/YjbR family DNA-binding protein Neighboring gene oxygen-insensitive NAD(P)H nitroreductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP055055.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. YbdG in Escherichia coli is a threshold-setting mechanosensitive channel with MscM activity. Schumann U, et al. Proc Natl Acad Sci U S A, 2010 Jul 13. PMID 20616037, Free PMC Article
  2. Characterization of three novel mechanosensitive channel activities in Escherichia coli. Edwards MD, et al. Channels (Austin), 2012 Jul-Aug. PMID 22874652, Free PMC Article
  3. High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria. Che Y, et al. Microbiome, 2022 Jan 25. PMID 35078531, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
mechanosensitive ion channel YbdG

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP055055.1 Reference assembly

    Range
    1351549..1352796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_001153148.1 MULTISPECIES: mechanosensitive ion channel YbdG [Enterobacteriaceae]

    See identical proteins and their annotated locations for WP_001153148.1

    UniProtKB/Swiss-Prot
    P0AAT4, P0AAT5, P39455, P77602
    UniProtKB/TrEMBL
    A0A0H3EEP5, A0A0I9QTV9, A0A1S9JIC7, A0A1X3J4K8, A0A1X3JKN4, A0A380B8T1, A0A3R0JQF8, A0A4P7TP12, A0A4P8C3M6, A0A7M3S3C1, A0A7U9LFF9, A0A822PWF3, A0A828UE81, A0A9Q6Y1N6, A0AAN4NWW3, B7N9I1, B7UKL9, D2A973, E2QHD7, F5NRS0, Q0T750, Q3Z4L5, W0FM52
    Conserved Domains (1) summary
    pfam00924
    Location:144 → 396
    MS_channel; Mechanosensitive ion channel
Nucleotide Protein
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