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LOC7496229 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7496229, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7496229
Gene description
protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
Locus tag
POPTR_009G144300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7496229 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 9 NC_037293.2 (11469541..11474848)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 9 NC_037293.1 (11433265..11438577)

Chromosome 9 - NC_037293.2Genomic Context describing neighboring genes Neighboring gene zinc finger A20 and AN1 domain-containing stress-associated protein 3 Neighboring gene protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like Neighboring gene subtilisin-like serine-protease S Neighboring gene uncharacterized LOC7474949

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037293.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    11469541..11474848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002313635.4 → XP_002313671.1  protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X1

    See identical proteins and their annotated locations for XP_002313671.1

    UniProtKB/TrEMBL
    B9HQW8
    Conserved Domains (3) summary
    COG0464
    Location:99 → 349
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    cd02678
    Location:4 → 77
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
    pfam09336
    Location:364 → 428
    Vps4_C; Vps4 C terminal oligomerization domain

  2. XM_024608722.2 → XP_024464490.1  protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X2

    Conserved Domains (2) summary
    COG0464
    Location:99 → 191
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    cd02678
    Location:4 → 77
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Nucleotide Protein
Heading Accession and Version

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