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LOC7494541 probable CoA ligase CCL7 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7494541, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7494541
Gene description
probable CoA ligase CCL7
Locus tag
POPTR_004G102000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7494541 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 4 NC_037288.2 (8943427..8946853)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 4 NC_037288.1 (8950016..8953445)

Chromosome 4 - NC_037288.2Genomic Context describing neighboring genes Neighboring gene sugar carrier protein C-like Neighboring gene sugar carrier protein C Neighboring gene uncharacterized LOC7494542 Neighboring gene uncharacterized LOC7468365

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CoA-ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable CoA ligase CCL7
Names
4-coumarate--CoA ligase-like 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037288.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    8943427..8946853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002305246.4 → XP_002305282.1  probable CoA ligase CCL7

    See identical proteins and their annotated locations for XP_002305282.1

    UniProtKB/TrEMBL
    A0A2K1X6J3, B9H3P7
    Conserved Domains (1) summary
    cd05904
    Location:21 → 535
    4CL; 4-Coumarate-CoA Ligase (4CL)
Nucleotide Protein
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