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LOC7491305 phytochrome A-associated F-box protein [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7491305, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7491305
Gene description
phytochrome A-associated F-box protein
Locus tag
POPTR_014G130000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7491305 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
1
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 14 NC_037298.2 (8704760..8706276)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 14 NC_037298.1 (9922908..9924439)

Chromosome 14 - NC_037298.2Genomic Context describing neighboring genes Neighboring gene mitochondrial zinc maintenance protein 1, mitochondrial Neighboring gene serine/arginine-rich-splicing factor SR34 Neighboring gene universal stress protein PHOS34 Neighboring gene probable E3 ubiquitin-protein ligase BAH1-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phytochrome A-associated F-box protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037298.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    8704760..8706276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002320310.4 → XP_002320346.1  phytochrome A-associated F-box protein

    See identical proteins and their annotated locations for XP_002320346.1

    UniProtKB/TrEMBL
    B9I9S1
    Conserved Domains (1) summary
    pfam12937
    Location:7 → 52
    F-box-like; F-box-like
Nucleotide Protein
Heading Accession and Version

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