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LOC7487366 uncharacterized LOC7487366 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7487366, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7487366
Gene description
uncharacterized LOC7487366
Locus tag
POPTR_004G092200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7487366 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 4 NC_037288.2 (7817063..7819881, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 4 NC_037288.1 (7803064..7805885, complement)

Chromosome 4 - NC_037288.2Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase SINA-like 10 Neighboring gene ATP-dependent Clp protease proteolytic subunit 3, chloroplastic Neighboring gene uncharacterized LOC7493535 Neighboring gene uncharacterized LOC112327274

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of super elongation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC7487366
Names
ell-associated factor Eaf

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037288.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    7817063..7819881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024599826.2 → XP_024455594.1  uncharacterized protein LOC7487366 isoform X1

    Conserved Domains (1) summary
    pfam09816
    Location:21 → 123
    EAF; RNA polymerase II transcription elongation factor

  2. XM_002305153.4 → XP_002305189.1  uncharacterized protein LOC7487366 isoform X2

    See identical proteins and their annotated locations for XP_002305189.1

    UniProtKB/TrEMBL
    B9H361
    Conserved Domains (1) summary
    pfam09816
    Location:21 → 123
    EAF; RNA polymerase II transcription elongation factor
Nucleotide Protein
Heading Accession and Version

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