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LOC7486902 vesicle-associated membrane protein 727 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7486902, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7486902
Gene description
vesicle-associated membrane protein 727
Locus tag
POPTR_008G019400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7486902 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 8 NC_037292.2 (977140..980368)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 8 NC_037292.1 (1031548..1034722)

Chromosome 8 - NC_037292.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18109808 Neighboring gene uncharacterized protein At2g38710 Neighboring gene uncharacterized LOC7490892 Neighboring gene ribonuclease H2 subunit A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle-associated membrane protein 727

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037292.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    977140..980368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002310970.4 → XP_002311006.1  vesicle-associated membrane protein 727

    See identical proteins and their annotated locations for XP_002311006.1

    UniProtKB/TrEMBL
    B9HKP0
    Conserved Domains (2) summary
    cd14824
    Location:8 → 140
    Longin; longin domain
    pfam00957
    Location:146 → 234
    Synaptobrevin

  2. XM_024605963.2 → XP_024461731.1  vesicle-associated membrane protein 727

    UniProtKB/TrEMBL
    B9HKP0
    Conserved Domains (2) summary
    cd14824
    Location:8 → 140
    Longin; longin domain
    pfam00957
    Location:146 → 234
    Synaptobrevin
Nucleotide Protein
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Research Materials