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LOC7482902 uncharacterized LOC7482902 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7482902, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7482902
Gene description
uncharacterized LOC7482902
Locus tag
POPTR_008G133000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7482902 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
2
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 8 NC_037292.2 (8803746..8808030)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 8 NC_037292.1 (8804901..8809185)

Chromosome 8 - NC_037292.2Genomic Context describing neighboring genes Neighboring gene protein PLANT CADMIUM RESISTANCE 2-like Neighboring gene protein PLANT CADMIUM RESISTANCE 2 Neighboring gene glucan endo-1,3-beta-glucosidase 3 Neighboring gene mediator of RNA polymerase II transcription subunit 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables dynein light intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule-based process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of dynein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC7482902
Names
dynein light chain, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037292.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    8803746..8808030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002311485.4 → XP_002311521.1  uncharacterized protein LOC7482902

    See identical proteins and their annotated locations for XP_002311521.1

    UniProtKB/TrEMBL
    B9HJE5
    Conserved Domains (1) summary
    PLN03058
    Location:1 → 128
    PLN03058; dynein light chain type 1 family protein; Provisional
Nucleotide Protein
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