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LOC7482872 probable ribose-5-phosphate isomerase 2 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7482872, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7482872
Gene description
probable ribose-5-phosphate isomerase 2
Locus tag
POPTR_008G127600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7482872 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 8 NC_037292.2 (8301100..8302569, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 8 NC_037292.1 (8314771..8316082, complement)

Chromosome 8 - NC_037292.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7482871 Neighboring gene putative fasciclin-like arabinogalactan protein 20 Neighboring gene protein PIN-LIKES 2 Neighboring gene uncharacterized LOC7488389

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribose-5-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ribose-5-phosphate isomerase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037292.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    8301100..8302569 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002312392.3 → XP_002312428.1  probable ribose-5-phosphate isomerase 2

    See identical proteins and their annotated locations for XP_002312428.1

    UniProtKB/TrEMBL
    A0A2K1YSI9, A9PI74
    Conserved Domains (1) summary
    PLN02384
    Location:1 → 264
    PLN02384; ribose-5-phosphate isomerase
Nucleotide Protein
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